Integration has become the backbone of modern business operations. As organizations connect platforms like Jira, ServiceNow, Salesforce, and others, data moves constantly between systems, teams, and even companies. But every data exchange point is a potential vulnerability.
This guide covers integration security from the ground up: what it is, how it works, why it matters, and the practical steps you can take to protect your data across connected systems.
Key Takeaways
- Integration security protects data confidentiality, integrity, and availability as information moves between connected platforms.
- Insecure integrations expose businesses to data breaches, regulatory penalties, and operational disruptions.
- API security, encryption, access controls, and identity management form the foundation of any secure integration strategy.
- Cross-company and MSP integrations introduce additional risks that require information classification and third-party security assessments.
- Choosing the right integration tool means evaluating security certifications, platform coverage, retry mechanisms, and independent sync control.

Understanding Integration Security
Integration security is a set of measures and protocols that protect data during transmission and processing between different platforms, companies, or teams. It ensures the data exchanged across your interconnected systems stays safe throughout its lifecycle.
Integration is necessary for business teams and processes to work together. It allows your systems and applications to communicate and exchange data without errors. But just as security guards protect physical assets, integration requires security measures to safeguard your digital data.
How Does Integration Security Work?
Integration security operates across multiple layers. At the transport layer, protocols like HTTPS with TLS 1.2 or 1.3 encrypt data in transit so interceptors cannot read it. At the application layer, authentication mechanisms like OAuth 2.0, JWT tokens, and API keys verify that only authorized systems and users can initiate or receive data exchanges.
Within the integration pipeline itself, data validation checks confirm that incoming and outgoing payloads match expected formats and schemas. Role-based access controls (RBAC) restrict who can configure integrations, modify sync rules, or access synchronized data.
And monitoring systems track every API call, data transfer, and configuration change to flag anomalies in real time.
These layers work together to address three core goals:
- Data Confidentiality. Sensitive business data like customer records, financial information, or intellectual property must remain accessible only to authorized parties. This means encrypting data both during storage and transit, and controlling exactly which fields and records get shared across systems.
- Data Integrity. Data must remain unaltered and accurate during and after integration. Techniques like hash functions and checksums act as digital fingerprints that verify your data has not been tampered with during exchange. If a checksum mismatch is detected, the sync can be halted before corrupted data enters your system.
- Data Availability. Your integrated data must be accessible when you need it. This involves redundant storage, regular backup mechanisms, and retry logic to prevent data loss from hardware failures, downtimes, or cyberattacks.
How Do Insecure Integrations Affect Businesses?
Insecure integrations are a primary target for cybercriminals looking to exploit vulnerabilities and gain unauthorized access to sensitive information. The consequences of a successful breach go well beyond the immediate incident.
- Financial losses and legal exposure. A data breach can lead to regulatory fines, class-action lawsuits, and remediation costs that run into the millions. Under GDPR alone, penalties can reach up to 4% of annual global revenue.
- Unauthorized access and data manipulation. Without proper authentication and access control, users or external actors can gain access to critical systems. This can result in data theft, manipulation of records, or deliberate service disruptions.
- Data corruption during transmission. Integrated data that gets corrupted during transfer leads to inaccurate information processing, which directly impacts business decisions and reporting.
- Reputational damage. Customer trust, once broken, is difficult to rebuild. Organizations that suffer integration-related breaches often face long-term brand damage that affects customer retention and partnership opportunities.
Target Data Breach (2013)
In 2013, attackers gained access to Target’s network through a third-party vendor’s credentials. The hackers exploited weak integration security between the vendor’s system and Target’s infrastructure to install malware on point-of-sale systems. The breach compromised credit and debit card data of over 40 million customers, plus the personal information of around 70 million individuals.
Real Estate Wealth Network Exposure (2023)
In a more recent example, the Real Estate Wealth Network inadvertently exposed over 1.5 billion records due to non-password-protected folders and system access. The exposed data included names, addresses, phone numbers, and property histories.
This incident highlights that insecure integrations are not always the result of sophisticated attacks. Sometimes, basic access control failures in how systems connect and share data are enough to cause massive exposure.
These cases illustrate why integration security cannot be an afterthought. It needs to be embedded in every connection from day one.
Common Integration Security Challenges
Several challenges make integration security difficult to get right:
- Data mapping, transformation, and validation issues. The data you exchange needs to be mapped accurately between systems, transformed to match the destination format, and validated for accuracy. A field mismatch between Jira work items and ServiceNow incidents, for instance, can introduce errors that cascade through downstream processes. When platforms use different schemas, data types, or naming conventions, every sync point becomes a potential failure point.
- Legacy system compatibility. Integrating older systems with modern cloud applications requires thoughtful planning. Legacy platforms often lack modern authentication methods, encryption support, or API standards. Ensuring security measures remain consistent across your entire integration ecosystem is critical because a single weak link compromises the chain.
- Vulnerability and patch management. Every connected system expands your attack surface. You need to track vulnerabilities across all integrated platforms and apply security patches promptly. A delay in patching one system can leave an open door to every system it connects to.
- Identity management. Maintaining consistent identity management across all integrated systems is complex, especially when different platforms use different authentication providers, user directories, and permission models. Without unified identity governance, users may end up with excessive access privileges across connected systems.
- API security. The APIs that power integrations must be protected against injection attacks, token-based vulnerabilities, brute-force attempts, and denial-of-service (DoS/DDoS) attacks. API security requires rate limiting, input validation, token rotation, and continuous monitoring of API traffic patterns.
- Real-time processing vs. security trade-offs. The need for immediate data access can conflict with security protocols. Incident escalation workflows, for example, demand near-instant sync between ITSM and DevOps platforms. Balancing speed with proper encryption, validation, and access checks requires careful architecture planning.
- Cloud and hybrid environments. Organizations running hybrid or multi-cloud setups face additional challenges. Data moving between on-premises systems and cloud platforms crosses different security boundaries, and each transition point needs its own set of protections.
Integration Security Challenges in an MSP or MSSP Setup
Intra-company integrations must be secure. But the security threats, challenges, and potential risks multiply when you connect applications across company borders. This is inherent to the nature of cross-company integrations, especially for MSPs connecting with their customers and external systems.
Here are some of the key challenges in an MSP environment:
- Information classification and filtering. Before starting any integration effort, you need a detailed account of proper information classification and the methods to achieve it. Filtering out internal data from what gets shared externally prevents accidental exposure of confidential business information.
- Private data identification. Messages containing private information must be identified and blocked from reaching the receiving system. In an MSP setup, where multiple client environments are connected to a single provider, the risk of private data leaking across tenant boundaries is significant.
- Third-party security assessments. Assessing the security posture of every company you integrate with is essential. This includes evaluating their compliance with regulatory requirements like GDPR, and confirming their incident response capabilities before data starts flowing.
- Multi-tenant data isolation. MSPs managing integrations for dozens of clients need strict data boundaries. A misconfigured sync rule that accidentally routes Client A’s ticket data into Client B’s system can create compliance violations and erode trust immediately.
Case: An MSSP needs to integrate its internal security operations platform with client ticketing systems across Jira, ServiceNow, and Freshservice.
Solution: Use an integration platform that gives each side independent control over sync rules and data filtering. The MSSP controls what security intelligence it shares, while each client controls what ticket data it exposes.
Real-world application: MSSPs like NVISO use secure integration solutions for deep ticket integration with clients, handling 500+ tickets monthly while maintaining strict data boundaries between client environments. This approach turns secure integration into a competitive advantage.
Regulatory Compliance and Integration Security
Compliance is not separate from integration security. It should be woven into the architecture of every connection.
As data flows between platforms, it crosses boundaries that are subject to data protection regulations. The specific requirements depend on your industry, geography, and the type of data you handle, but the major frameworks include:
- GDPR (General Data Protection Regulation). Applies to any organization handling personal data of EU residents. Integrations must support data minimization (only syncing necessary fields), the right to erasure (the ability to delete synced data on request), and data processing agreements with third-party integration vendors.
- CCPA (California Consumer Privacy Act). Organizations handling California residents’ personal data must provide transparency about what data is collected, shared, and synced, and must honor consumer requests to access or delete their information.
The practical implication is straightforward: your integration tool needs to support encryption, granular access controls, data filtering, and the ability to exclude specific fields from synchronization. If the tool cannot selectively control what data leaves your environment, meeting compliance requirements becomes significantly harder.
Best Practices for Secure Integration
You can strengthen the security of your integrations by following these best practices:
Implement Authentication and Authorization
Employ Role-Based Access Control (RBAC) to ensure only the right users have access to integrated systems. RBAC works by mapping permissions to roles rather than individual users, which simplifies management as teams grow or change. Pair this with MFA (Multi-Factor Authentication) wherever possible for an added layer of security on user access.
Use Secure Communication Protocols
Employ secure protocols like HTTPS with TLS 1.2 or 1.3 to encrypt information in transit. Avoid older protocols like TLS 1.0 or SSL, which have known vulnerabilities. Use updated and strong encryption algorithms for data at rest as well, ensuring that even if storage is compromised, the data remains unreadable.
Secure APIs and Endpoints
Authenticate and authorize every API call so only legitimate systems and users gain access. Use OAuth 2.0 tokens, API keys, and JWT (JSON Web Tokens) for secure API access and authorization. Implement rate limiting to prevent abuse, and validate all inputs to protect against injection attacks.
Monitor and Log Activity
Use monitoring mechanisms to record integration activities like API calls, data transfers, and configuration changes. Enable log management to keep track of potentially suspicious activities and respond promptly. Look for anomalies like unusual data volumes, unexpected API calls from unfamiliar IP addresses, or access attempts outside of normal business hours.
Perform Regular Security Assessments
Conduct security assessments and penetration testing on integrated systems to identify vulnerabilities. Regular cloud security assessments provide insights into security gaps and help organizations address risks proactively. Ensure timely security updates and patches across all connected platforms. You can think about developing a vulnerability management program to formalize your approach to monitoring integrated systems. Having a clear framework with determined tools and processes makes it easier to stay ahead of emerging threats.
Limit Data Exposure
Limit the data exposed through integrations to only what is necessary for the operation. This aligns with both the principle of data minimization (required by GDPR) and good security hygiene. Apply data anonymization or pseudonymization techniques to protect sensitive data. For cross-company integrations, carefully define which fields, comments, and attachments should cross the boundary, and exclude everything else.
Establish Error Handling Mechanisms
Ensure proper error handling is in place so no sensitive data is displayed in error messages. Generic yet meaningful error responses prevent attackers from gaining insights into your system’s inner workings. Integration platforms should also have built-in retry mechanisms so that temporary failures do not result in data loss or corruption.
Apply the Principle of Least Privilege
Grant the minimum required privileges to every user, service account, and API key involved in the integration. This ensures users do not gain access to information outside their scope. Review privileges regularly to remove unnecessary permissions as roles change.
Secure the Data
The general approaches for securing data include:
- Tokenization. Replace sensitive information with random data strings (tokens) that have no decipherable relationship to the original data. Tokens are typically stored at an external, secured data source and can be reversed only by authorized systems.
- Data masking. Convert data into a format that appears authentic but is useless to unauthorized users. Techniques include shuffling, substituting, deleting, or scrambling data values.
- Encryption. Convert plain text into ciphertext using secret encryption keys. This protects data both during storage and transit, ensuring secure transmission and decryption only at the authorized destination.
Train Employees and End Users
Conduct regular security awareness training to educate users, admins, and stakeholders about integration security best practices. The human element is often the weakest link. Phishing attacks, misconfigured sync rules, and accidental data exposure all stem from user error. Encourage reporting of suspicious activities or potential security threats, and build a culture where security is everyone’s responsibility.
Stay Updated With Security Best Practices
Stay informed about the latest security trends, industry standards, and vulnerabilities in the systems you integrate. Subscribe to vendor security advisories, monitor CVE databases for your platform stack, and participate in relevant security communities. Security is not a one-time setup. It is an ongoing process that must evolve as your integration landscape grows.
Practical Use Cases for Integration Security
Here are some real-world scenarios where integration security plays a critical role:
Securing IT Escalation Workflows
Case: A mid-size SaaS company runs customer support in Zendesk and engineering in Jira. When critical bugs are reported, support agents escalate work items to engineering. Without proper security, internal engineering discussions, code references, and customer PII flow freely between systems.
Solution: Configure the integration to sync only the fields necessary for escalation: summary, priority, status, and a sanitized description. Use field-level filtering to strip internal comments, code snippets, and customer contact details from the outgoing sync. Apply RBAC so only senior support agents can trigger escalations.
Real-world application: This approach ensures engineering gets enough context to act, while customer PII stays within the support platform. The integration tool handles the filtering automatically on every sync event.
Cross-Company Incident Management for MSPs
Case: An MSP manages IT operations for 15 clients, each running a different ITSM platform (Freshservice, ServiceNow, Jira Service Management, Zendesk). The MSP needs to pull incident data from all client environments into its own operations platform without exposing one client’s data to another.
Solution: Set up independent integration connections for each client with isolated sync rules. Each client controls what data they share. The MSP applies incoming data filters that strip client-identifying metadata before routing to internal teams. Field-level access controls ensure that MSP staff working on Client A’s tickets cannot see Client B’s data.
Real-world application: This multi-tenant integration model allows the MSP to scale client onboarding while maintaining strict data isolation. Each new client gets their own secure connection without impacting existing integrations.
Choosing a Secure Integration Solution
Not all integration tools treat security with the same rigor. Here are the key factors to evaluate:
- Standard security mechanisms. Look for tools that support authentication and access control, encryption (TLS 1.2+, AES-256), and consistent vulnerability and patch management. These are non-negotiable for any enterprise integration.
- Independent sync control. When integrating with external companies, you need a solution that gives each side full control over their own sync rules. This means you decide exactly what data leaves your environment and how incoming data is processed, without relying on the other side’s admin. This level of independence is essential for cross-company, MSP, and vendor integrations where data sovereignty matters.
- Robustness and retry mechanisms. Integrations must withstand downtimes and system failures without losing data. Built-in retry mechanisms that resume from the exact point of failure keep data accurate and prevent gaps during outages.
- Platform coverage. The tool should support the platforms you currently use and those you might adopt. Broad connector support across ITSM, DevOps, CRM, and customer support platforms (Jira, ServiceNow, Salesforce, Zendesk, Azure DevOps, GitHub, Freshservice, Freshdesk, Asana, and custom REST API connectors) reduces the need for multiple integration solutions.
- Ease of integration and configuration. The tool must integrate with your existing systems with minimal disruption to development and operational workflows. AI-assisted configuration that converts natural language into working sync rules can significantly reduce setup time.
- Scalability. The solution should handle your current integration volume and scale as your environment grows, without introducing performance bottlenecks or requiring architectural changes.
- Vendor reputation and support. Research the vendor’s track record on security, uptime, and customer support. Look for ISO 27001 certification and transparent security documentation.
- Cost-effectiveness. Evaluate total cost of ownership, including licensing, maintenance, and the operational impact on your teams. A cheaper tool that requires constant manual intervention may cost more in the long run.

Exalate: Secure Integration Across Platforms
Exalate is a fully customizable integration solution that supports bidirectional synchronization across Jira, ServiceNow, Salesforce, Zendesk, Azure DevOps, Azure DevOps Server, GitHub, Freshservice, Freshdesk, Asana, and custom platforms via REST API connectors.
Its customization capabilities are powered by a Groovy scripting engine that lets you implement advanced integration use cases with precise control over what data syncs, when it syncs, and how it transforms between platforms.
Exalate also offers AI-assisted integration through Aida, its scripting assistant. Aida converts simple natural language prompts into working Groovy scripts by considering your current sync configuration, your input, and its scripting API. Learn more about how Aida works in the documentation.
It implements standard security mechanisms, including HTTPS, JWT-based tokens, role-based access control, TLS 1.2 and 1.3 encryption, and multi-factor authentication. Exalate holds ISO 27001:2022 certification. You can explore its full security and compliance posture through the Trust Center.
Beyond standard security, a few architectural choices make Exalate well-suited for security-sensitive environments:
Independent Sync Control
Each side of an Exalate integration maintains full control over what data it shares and how it handles incoming data. With specialized processors, the platform filters and transmits only the necessary information between applications. You can exclude sending or receiving unwanted data, and your integration partners can do the same.
This independence means you do not need to rely on the other side’s admin to protect your data. Each team manages its own sync rules, applies its own filters, and adapts its configuration locally without requiring coordination or communication with the other side. For MSPs managing multiple client environments, this is particularly valuable because each client connection operates in complete isolation.
Sync Queues and Retry Mechanisms
Exalate uses sync queues on both integrating ends to enable an asynchronous sync process. Each sync event is processed through the queue and applied in the same order it was initiated at the other end. This guarantees that all modifications are implemented correctly, even during periods of system downtime or failure.
The built-in retry mechanism facilitates recovery from failures and allows synchronization to continue from the point of interruption. This means a temporary outage on one side does not result in lost or duplicated data.
Other Security Measures
All customer data in Exalate’s cloud environment is encrypted in transit and at rest. Offline backups are encrypted per tenant. Authentication and authorization are delegated to the underlying platform, maintaining consistency in access management across connected systems.
Exalate integrates security vulnerability scanning at every step of development, deployment, and operation. Security is proactively addressed from the moment a developer writes code, ensuring a secure foundation throughout the system.
You can report any vulnerability, concern, or incident through the support portal or via email to security@exalate.com.
Note: For a detailed technical overview, refer to the security and architecture whitepaper.
Emerging Trends in Integration Security
Integration security is evolving alongside the broader threat landscape. Here are the trends shaping how organizations protect connected systems:
AI-Powered Threat Detection
AI-powered threat detection systems are now actively deployed to monitor data flows, patterns, and anomalies across integrated platforms. Machine learning algorithms detect potential breaches, unauthorized access, and suspicious activities in real time, enabling faster response times than manual monitoring can achieve. As integration volumes grow, AI-driven security monitoring becomes less of a nice-to-have and more of a baseline requirement.
Zero Trust Architecture
Zero Trust Architecture (ZTA) has moved from concept to implementation across enterprise environments. ZTA operates on the principle that no entity, whether inside or outside the network, is trusted by default. Every access request is verified, every data exchange is authenticated, and strict access controls are enforced at every layer. For integrations, this means each API call, each sync event, and each configuration change is treated as potentially untrusted until verified.
Container and Microservices Security
Containerization using technologies like Docker and Kubernetes continues to expand as the standard for deploying integration infrastructure. Securing containers requires vulnerability scanning of container images, runtime protection, network segmentation between containers, and strict access controls on orchestration platforms. As integrations increasingly run as microservices, each service needs its own security boundary.
Privacy-Enhancing Technologies
Techniques like differential privacy, homomorphic encryption, and secure multi-party computation are gaining traction. These technologies allow organizations to process and analyze integrated data without exposing the underlying raw information. For cross-company integrations where both parties need insights but neither wants to share full datasets, privacy-enhancing technologies offer a path forward.

Conclusion
Integration security works as a shield that fortifies the bridges between systems, ensuring data remains safe and reliable. It helps businesses embrace integration fully while safeguarding valuable data.
With secure integration solutions like Exalate, organizations can connect platforms like Jira, ServiceNow, Salesforce, Zendesk, Azure DevOps, GitHub, Freshservice, Freshdesk, and Asana without compromising on security. Each side retains full control, data stays encrypted, and compliance requirements are met by design.
Frequently Asked Questions
Why do I need to integrate my applications?
You need to integrate your applications to enable smooth data exchange, streamline business workflows, improve productivity, and provide a unified user experience. Integration allows your systems and teams to work together cohesively, eliminating data silos and enhancing overall efficiency. For example, connecting your ITSM platform (like Freshservice or ServiceNow) with your DevOps tool (like Jira or Azure DevOps) ensures support tickets automatically reach the right engineering team without manual handoffs.
What is integration security, and why is it important?
Integration security is the practice of protecting data during the process of connecting different applications, systems, and platforms. It is essential to safeguard sensitive information, maintain business continuity, comply with regulations like GDPR, and defend against cyber threats that target the data exchange points between connected systems.
How do I secure integrations between software applications?
To secure integrations, employ encryption (TLS 1.2+) for data in transit and at rest, use secure APIs with OAuth 2.0 and JWT authentication, implement role-based access controls, perform regular vulnerability scanning, and monitor all integration activity. Regularly update software and patches across all connected platforms to mitigate potential risks.
What platforms does Exalate support for secure integration?
Exalate supports bidirectional integration across Jira, ServiceNow, Salesforce, Zendesk, Azure DevOps (Cloud and Server), GitHub, Freshservice, Freshdesk, Asana, and custom platforms via REST API connectors. Each connector supports granular control over what data syncs, when, and how it transforms between systems.
How does Exalate handle security for cross-company integrations?
Exalate gives each side of the integration independent control over sync rules and data filtering. Your team decides what leaves your environment, and incoming data is processed according to your own rules. Data is encrypted in transit and at rest, authentication uses JWT tokens, and RBAC controls who can configure integrations.
Can Exalate integrate with legacy or custom platforms?
Yes. Exalate offers custom REST API connectors that extend integration capabilities to proprietary or legacy platforms that expose a REST API. This is useful for organizations running older systems alongside modern cloud applications, where native connectors may not be available.
What is Aida, and how does it help with integration configuration?
Aida is Exalate’s AI-powered scripting assistant. It converts natural language prompts into working Groovy sync scripts by analyzing your current sync configuration, your input, and its scripting API. Aida helps reduce setup time for complex integrations, especially when you need conditional logic, field transformations, or custom sync rules.
Is Exalate suitable for MSP environments?
Yes. Exalate’s architecture gives each client connection independent sync rules and data isolation. MSPs can manage integrations for dozens of clients across different platforms (Jira, ServiceNow, Freshservice, Zendesk, Freshdesk, and others) while ensuring that no client’s data leaks into another client’s environment.
How does Exalate ensure data integrity during sync failures?
Exalate uses sync queues that process events in the exact order they were initiated. If a system goes down, the built-in retry mechanism resumes synchronization from the point of interruption. No sync events are lost or duplicated, even during extended outages.
What regulatory compliance requirements does Exalate support?
Exalate supports compliance requirements by offering encryption in transit and at rest, role-based access controls, granular data filtering (to exclude sensitive fields from sync), and per-tenant data isolation. These capabilities help organizations meet GDPR, CCPA, and other regulatory standards. You can review detailed compliance information in the Trust Center.
Recommended Reading:



